uboot: (firmwareOdroidC2/C4) don't invoke patch tool, use patches = [] instead

https://github.com/NixOS/nixpkgs/blob/master/pkgs/stdenv/generic/setup.sh#L948
this can do it nicely.

Signed-off-by: Anton Arapov <anton@deadbeef.mx>

pkgs/applications/science/astronomy/gildas/aarch64.patch

@@ -0,0 +1,12 @@
+diff -ruN gildas-src-jul18a/admin/define-system.sh gildas-src-jul18a.aarch64/admin/define-system.sh
+--- gildas-src-jul18a/admin/define-system.sh	2018-06-12 15:22:32.000000000 +0200
++++ gildas-src-jul18a.aarch64/admin/define-system.sh	2018-07-21 13:05:52.000000000 +0200
+@@ -174,7 +174,7 @@
+     DEFAULT_CONFIG=          # Default config is empty
+     case `uname` in
+         Linux)
+-            if [ `uname -m | grep -c "x86_64"` -ne 0 ]; then
++            if [ `uname -m | grep -c "64"` -ne 0 ]; then
+         	GAG_MACHINE=x86_64
+             else
+         	GAG_MACHINE=pc

pkgs/applications/science/astronomy/gildas/clang.patch

@@ -0,0 +1,22 @@
+diff -ruN gildas-src-jun18a/admin/define-system.sh gildas-src-jun18a.clang/admin/define-system.sh
+--- gildas-src-jun18a/admin/define-system.sh	2018-03-12 11:07:57.000000000 +0100
++++ gildas-src-jun18a.clang/admin/define-system.sh	2018-06-12 14:56:14.000000000 +0200
+@@ -218,13 +218,13 @@
+         	else
+         	    GAG_MACHINE=pc
+         	fi
+-                if which gcc > /dev/null 2>&1; then
+-                    DEFAULT_CCOMPILER=gcc
++                if which clang > /dev/null 2>&1; then
++                    DEFAULT_CCOMPILER=clang
+                 fi
+-                if which g++ > /dev/null 2>&1; then
+-                    DEFAULT_CXXCOMPILER=g++
+-                elif which clang++ > /dev/null 2>&1; then
++                if which clang++ > /dev/null 2>&1; then
+                     DEFAULT_CXXCOMPILER=clang++
++                elif which g++ > /dev/null 2>&1; then
++                    DEFAULT_CXXCOMPILER=g++
+                 fi
+         	if which ifort > /dev/null 2>&1; then
+         	    DEFAULT_FCOMPILER=ifort

pkgs/applications/science/astronomy/gildas/default.nix

@@ -0,0 +1,71 @@
+{ lib, stdenv, fetchurl, gtk2-x11 , pkg-config , python3 , gfortran , lesstif
+, cfitsio , getopt , perl , groff , which, darwin, ncurses
+}:
+
+let
+  python3Env = python3.withPackages(ps: with ps; [ numpy ]);
+in
+
+stdenv.mkDerivation rec {
+  srcVersion = "nov21a";
+  version = "20211101_a";
+  pname = "gildas";
+
+  src = fetchurl {
+    # For each new release, the upstream developers of Gildas move the
+    # source code of the previous release to a different directory
+    urls = [ "http://www.iram.fr/~gildas/dist/gildas-src-${srcVersion}.tar.xz"
+      "http://www.iram.fr/~gildas/dist/archive/gildas/gildas-src-${srcVersion}.tar.xz" ];
+    sha256 = "0fb6iqwh4hm7v7sib7sx98vxdavn3d6q2gq6y6vxg2z29g31f8g2";
+  };
+
+  nativeBuildInputs = [ pkg-config groff perl getopt gfortran which ];
+
+  buildInputs = [ gtk2-x11 lesstif cfitsio python3Env ncurses ]
+    ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ CoreFoundation ]);
+
+  patches = [ ./wrapper.patch ./clang.patch ./aarch64.patch ];
+
+  NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isClang "-Wno-unused-command-line-argument";
+
+  NIX_LDFLAGS = lib.optionalString stdenv.isDarwin (with darwin.apple_sdk.frameworks; "-F${CoreFoundation}/Library/Frameworks");
+
+  configurePhase=''
+    substituteInPlace admin/wrapper.sh --replace '%%OUT%%' $out
+    substituteInPlace admin/wrapper.sh --replace '%%PYTHONHOME%%' ${python3Env}
+    substituteInPlace utilities/main/gag-makedepend.pl --replace '/usr/bin/perl' ${perl}/bin/perl
+    source admin/gildas-env.sh -c gfortran -o openmp
+    echo "gag_doc:        $out/share/doc/" >> kernel/etc/gag.dico.lcl
+  '';
+
+  postInstall=''
+    mkdir -p $out/bin
+    cp -a ../gildas-exe-${srcVersion}/* $out
+    mv $out/$GAG_EXEC_SYSTEM $out/libexec
+    cp admin/wrapper.sh $out/bin/gildas-wrapper.sh
+    chmod 755 $out/bin/gildas-wrapper.sh
+    for i in $out/libexec/bin/* ; do
+      ln -s $out/bin/gildas-wrapper.sh $out/bin/$(basename "$i")
+    done
+  '';
+
+  meta = {
+    broken = stdenv.isDarwin;
+    description = "Radioastronomy data analysis software";
+    longDescription = ''
+      GILDAS is a collection of state-of-the-art software
+      oriented toward (sub-)millimeter radioastronomical
+      applications (either single-dish or interferometer).
+      It is daily used to reduce all data acquired with the
+      IRAM 30M telescope and Plateau de Bure Interferometer
+      PDBI (except VLBI observations). GILDAS is easily
+      extensible. GILDAS is written in Fortran-90, with a
+      few parts in C/C++ (mainly keyboard interaction,
+      plotting, widgets).'';
+    homepage = "http://www.iram.fr/IRAMFR/GILDAS/gildas.html";
+    license = lib.licenses.free;
+    maintainers = [ lib.maintainers.bzizou lib.maintainers.smaret ];
+    platforms = lib.platforms.all;
+  };
+
+}

pkgs/applications/science/astronomy/gildas/wrapper.patch

@@ -0,0 +1,20 @@
+diff --new-file -r -u gildas-src-feb17d.orig/admin/wrapper.sh gildas-src-feb17d/admin/wrapper.sh
+--- gildas-src-feb17d.orig/admin/wrapper.sh	1970-01-01 01:00:00.000000000 +0100
++++ gildas-src-feb17d/admin/wrapper.sh	2017-05-18 21:00:01.660778782 +0200
+@@ -0,0 +1,16 @@
++#!/bin/sh -e
++
++export GAG_ROOT_DIR="%%OUT%%"
++export GAG_PATH="${GAG_ROOT_DIR}/etc"
++export GAG_EXEC_SYSTEM="libexec"
++export GAG_GAG="${HOME}/.gag"
++export PYTHONHOME="%%PYTHONHOME%%"
++if [ -z "\$PYTHONPATH" ]; then
++  PYTHONPATH="${GAG_ROOT_DIR}/${GAG_EXEC_SYSTEM}/python"
++else
++  PYTHONPATH="${GAG_ROOT_DIR}/${GAG_EXEC_SYSTEM}/python:${PYTHONPATH}"
++fi
++export PYTHONPATH
++export LD_LIBRARY_PATH=${GAG_ROOT_DIR}/${GAG_EXEC_SYSTEM}/lib/
++me=`basename $0`
++exec ${GAG_ROOT_DIR}/${GAG_EXEC_SYSTEM}/bin/${me} ${*}