uboot: (firmwareOdroidC2/C4) don't invoke patch tool, use patches = [] instead
https://github.com/NixOS/nixpkgs/blob/master/pkgs/stdenv/generic/setup.sh#L948 this can do it nicely. Signed-off-by: Anton Arapov <anton@deadbeef.mx>
This commit is contained in:
commit
56de2bcd43
30691 changed files with 3076956 additions and 0 deletions
45
pkgs/applications/science/biology/bowtie/default.nix
Normal file
45
pkgs/applications/science/biology/bowtie/default.nix
Normal file
|
|
@ -0,0 +1,45 @@
|
|||
{ lib, stdenv, fetchFromGitHub, fetchpatch, zlib }:
|
||||
|
||||
stdenv.mkDerivation rec {
|
||||
pname = "bowtie";
|
||||
version = "1.3.1";
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "BenLangmead";
|
||||
repo = pname;
|
||||
rev = "v${version}";
|
||||
sha256 = "sha256-mWItmrTMPst/NnzSpxxTHcBztDqHPCza9yOsZPwp7G4=";
|
||||
};
|
||||
|
||||
patches = [
|
||||
# Without this patch, compiling with clang on an M1 Mac fails because
|
||||
# 'cpuid.h' is included. It only works on x86 and throws an error.
|
||||
(fetchpatch {
|
||||
name = "fix_compilation_on_arm64";
|
||||
url = "https://github.com/BenLangmead/bowtie/commit/091d72f4cb69ca0713704d38bd7f9b37e6c4ff2d.patch";
|
||||
sha256 = "sha256-XBvgICUBnE5HKpJ36IHTDiKjJgLFKETsIaJC46uN+2I=";
|
||||
})
|
||||
|
||||
# Without this patch, compilation adds the current source directory to the
|
||||
# include search path, and #include <version> in standard library code can
|
||||
# end up picking the unrelated VERSION source code file on case-insensitive
|
||||
# file systems.
|
||||
(fetchpatch {
|
||||
name = "fix_include_search_path";
|
||||
url = "https://github.com/BenLangmead/bowtie/commit/c208b9db936eab0bc3ffdf0182b4f59a9017a1c4.patch";
|
||||
sha256 = "sha256-772EE+oWFWXssSMabPryb0AfIS1tC10mPTRCBm7RrUs=";
|
||||
})
|
||||
];
|
||||
|
||||
buildInputs = [ zlib ];
|
||||
|
||||
installFlags = [ "prefix=$(out)" ];
|
||||
|
||||
meta = with lib; {
|
||||
description = "An ultrafast memory-efficient short read aligner";
|
||||
license = licenses.artistic2;
|
||||
homepage = "http://bowtie-bio.sourceforge.net";
|
||||
maintainers = with maintainers; [ prusnak ];
|
||||
platforms = platforms.all;
|
||||
};
|
||||
}
|
||||
Loading…
Add table
Add a link
Reference in a new issue