uboot: (firmwareOdroidC2/C4) don't invoke patch tool, use patches = [] instead
https://github.com/NixOS/nixpkgs/blob/master/pkgs/stdenv/generic/setup.sh#L948 this can do it nicely. Signed-off-by: Anton Arapov <anton@deadbeef.mx>
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36
pkgs/applications/science/biology/muscle/default.nix
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36
pkgs/applications/science/biology/muscle/default.nix
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@ -0,0 +1,36 @@
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{ lib, stdenv, fetchurl }:
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stdenv.mkDerivation rec {
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_name = "muscle";
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name = "${_name}-${version}";
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version = "3.8.31";
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src = fetchurl {
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url = "https://www.drive5.com/muscle/downloads${version}/${_name}${version}_src.tar.gz";
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sha256 = "1b89z0x7h098g99g00nqadgjnb2r5wpi9s11b7ddffqkh9m9dia3";
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};
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patches = [
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./muscle-3.8.31-no-static.patch
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];
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preBuild = ''
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cd ./src/
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patchShebangs mk
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'';
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installPhase = ''
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install -vD muscle $out/bin/muscle
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'';
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meta = with lib; {
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broken = (stdenv.isLinux && stdenv.isAarch64);
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description = "A multiple sequence alignment method with reduced time and space complexity";
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license = licenses.publicDomain;
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homepage = "https://www.drive5.com/muscle/";
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maintainers = [ maintainers.unode ];
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# NOTE: Supposed to be compatible with darwin/intel & PPC but currently fails.
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# Anyone with access to these platforms is welcome to give it a try
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platforms = lib.platforms.linux;
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};
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}
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@ -0,0 +1,21 @@
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--- a/src/mk 2010-05-02 01:15:42.000000000 +0200
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+++ b/src/mk 2018-01-27 17:07:23.539092748 +0100
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@@ -5,14 +5,14 @@
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rm -f *.o muscle.make.stdout.txt muscle.make.stderr.txt
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for CPPName in $CPPNames
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do
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- echo $CPPName >> /dev/tty
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+ echo $CPPName
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g++ $ENV_GCC_OPTS -c -O3 -msse2 -mfpmath=sse -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o >> muscle.make.stdout.txt 2>> muscle.make.stderr.txt
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done
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LINK_OPTS=
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-if [ `uname -s` == Linux ] ; then
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- LINK_OPTS=-static
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-fi
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+#if [ `uname -s` == Linux ] ; then
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+# LINK_OPTS=-static
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+#fi
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g++ $LINK_OPTS $ENV_LINK_OPTS -g -o muscle $ObjNames >> muscle.make.stdout.txt 2>> muscle.make.stderr.txt
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tail muscle.make.stderr.txt
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