aland/nixpkgs-odroid-hc4
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions 2

uboot: (firmwareOdroidC2/C4) don't invoke patch tool, use patches = [] instead

Browse source 
https://github.com/NixOS/nixpkgs/blob/master/pkgs/stdenv/generic/setup.sh#L948
this can do it nicely.

Signed-off-by: Anton Arapov <anton@deadbeef.mx>
This commit is contained in:
Anton Arapov 2021-04-03 12:58:10 +02:00 • committed by Alan Daniels
commit 56de2bcd43
30691 changed files with 3076956 additions and 0 deletions
Download patch file Download diff file Expand all files Collapse all files

39
pkgs/applications/science/biology/paml/default.nix Normal file
View file

@ -0,0 +1,39 @@
{stdenv, fetchurl}:
stdenv.mkDerivation rec {
version = "4.9j";
pname = "paml";
src = fetchurl {
url = "http://abacus.gene.ucl.ac.uk/software/paml${version}.tgz";
sha256 = "0qflf3i27x6jwks3c6q560m1q8r043ja96syah145113iz5wdalp";
};
# Workaround build failure on -fno-common toolchains like upstream
# gcc-10. Otherwise build fails as:
# ld: /build/ccKomtcd.o:(.bss+0x4544): multiple definition of `SeqTypes';
# /build/ccx7EsgU.o:(.bss+0x2a0dfdc): first defined here
NIX_CFLAGS_COMPILE = "-fcommon";
preBuild = ''
cd ./src/
'';
installPhase = ''
mkdir -pv $out/bin
cp -v codeml $out/bin
cp -v baseml $out/bin
cp -v basemlg $out/bin
cp -v chi2 $out/bin
cp -v codeml $out/bin
cp -v evolver $out/bin
cp -v mcmctree $out/bin
cp -v pamp $out/bin
cp -v yn00 $out/bin
'';
meta = {
description = "Phylogenetic Analysis by Maximum Likelihood (PAML)";
longDescription = "PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. It is maintained and distributed for academic use free of charge by Ziheng Yang. ANSI C source codes are distributed for UNIX/Linux/Mac OSX, and executables are provided for MS Windows. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.";
license = "non-commercial";
homepage = "http://abacus.gene.ucl.ac.uk/software/paml.html";
};
}