uboot: (firmwareOdroidC2/C4) don't invoke patch tool, use patches = [] instead

https://github.com/NixOS/nixpkgs/blob/master/pkgs/stdenv/generic/setup.sh#L948
this can do it nicely.

Signed-off-by: Anton Arapov <anton@deadbeef.mx>

pkgs/applications/science/biology/samtools/default.nix

@@ -0,0 +1,50 @@
+{ lib, stdenv, fetchurl, fetchpatch, zlib, htslib, perl, ncurses ? null }:
+
+stdenv.mkDerivation rec {
+  pname = "samtools";
+  version = "1.13";
+
+  src = fetchurl {
+    url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2";
+    sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA=";
+  };
+
+  patches = [
+    # Pull upstream patch for ncurses-6.3 support
+    (fetchpatch {
+      name = "ncurses-6.3.patch";
+      url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch";
+      sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838=";
+    })
+  ];
+
+  nativeBuildInputs = [ perl ];
+
+  buildInputs = [ zlib ncurses htslib ];
+
+  preConfigure = lib.optional stdenv.hostPlatform.isStatic ''
+    export LIBS="-lz -lbz2 -llzma"
+  '';
+  makeFlags = lib.optional stdenv.hostPlatform.isStatic "AR=${stdenv.cc.targetPrefix}ar";
+
+  configureFlags = [ "--with-htslib=${htslib}" ]
+    ++ lib.optional (ncurses == null) "--without-curses"
+    ++ lib.optional stdenv.hostPlatform.isStatic ["--without-curses" ]
+    ;
+
+  preCheck = ''
+    patchShebangs test/
+  '';
+
+  enableParallelBuilding = true;
+
+  doCheck = true;
+
+  meta = with lib; {
+    description = "Tools for manipulating SAM/BAM/CRAM format";
+    license = licenses.mit;
+    homepage = "http://www.htslib.org/";
+    platforms = platforms.unix;
+    maintainers = with maintainers; [ mimame unode ];
+  };
+}

pkgs/applications/science/biology/samtools/samtools-0.1.19-no-curses.patch

@@ -0,0 +1,22 @@
+diff --git a/Makefile b/Makefile
+index 2f51bfc..395d6f1 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,7 +1,7 @@
+ CC=			gcc
+ CFLAGS=		-g -Wall -O2
+ #LDFLAGS=		-Wl,-rpath,\$$ORIGIN/../lib
+-DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1
++DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE # -D_CURSES_LIB=1
+ KNETFILE_O=	knetfile.o
+ LOBJS=		bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o	\
+ 			bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o \
+@@ -15,7 +15,7 @@ PROG=		samtools
+ INCLUDES=	-I.
+ SUBDIRS=	. bcftools misc
+ LIBPATH=
+-LIBCURSES=	-lcurses # -lXCurses
++LIBCURSES=	# -lcurses # -lXCurses
+ 
+ .SUFFIXES:.c .o
+ .PHONY: all lib

pkgs/applications/science/biology/samtools/samtools_0_1_19.nix

@@ -0,0 +1,33 @@
+{ lib, stdenv, fetchurl, zlib }:
+
+stdenv.mkDerivation rec {
+  pname = "samtools";
+  version = "0.1.19";
+
+  src = fetchurl {
+    url = "mirror://sourceforge/samtools/${pname}-${version}.tar.bz2";
+    sha256 = "d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4";
+  };
+
+  patches = [
+    ./samtools-0.1.19-no-curses.patch
+  ];
+
+  buildInputs = [ zlib ];
+
+  installPhase = ''
+    mkdir -p $out/bin
+    mkdir -p $out/share/man
+
+    cp samtools $out/bin
+    cp samtools.1 $out/share/man
+  '';
+
+  meta = with lib; {
+    description = "Tools for manipulating SAM/BAM/CRAM format";
+    license = licenses.mit;
+    homepage = "http://samtools.sourceforge.net/";
+    platforms = platforms.unix;
+    maintainers = [ maintainers.unode ];
+  };
+}