uboot: (firmwareOdroidC2/C4) don't invoke patch tool, use patches = [] instead
https://github.com/NixOS/nixpkgs/blob/master/pkgs/stdenv/generic/setup.sh#L948 this can do it nicely. Signed-off-by: Anton Arapov <anton@deadbeef.mx>
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commit
56de2bcd43
30691 changed files with 3076956 additions and 0 deletions
29
pkgs/applications/science/biology/somatic-sniper/default.nix
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29
pkgs/applications/science/biology/somatic-sniper/default.nix
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@ -0,0 +1,29 @@
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{lib, stdenv, fetchFromGitHub, cmake, zlib, ncurses}:
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stdenv.mkDerivation rec {
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pname = "somatic-sniper";
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version = "1.0.5.0";
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src = fetchFromGitHub {
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owner = "genome";
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repo = "somatic-sniper";
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rev = "v${version}";
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sha256 = "0lk7p9sp6mp50f6w1nppqhr40fcwy1asw06ivw8w8jvvnwaqf987";
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};
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patches = [ ./somatic-sniper.patch ];
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nativeBuildInputs = [ cmake ];
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buildInputs = [ zlib ncurses ];
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enableParallelBuilding = false;
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meta = with lib; {
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description = "Identify single nucleotide positions that are different between tumor and normal";
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license = licenses.mit;
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homepage = "https://github.com/genome/somatic-sniper";
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maintainers = with maintainers; [ jbedo ];
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platforms = platforms.linux;
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};
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}
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@ -0,0 +1,26 @@
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diff --git a/CMakeLists.txt b/CMakeLists.txt
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index 6d5a180..7254292 100644
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--- a/CMakeLists.txt
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+++ b/CMakeLists.txt
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@@ -11,7 +11,7 @@ set(CMAKE_MODULE_PATH
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)
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include(TestHelper)
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-include(VersionHelper)
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+#include(VersionHelper)
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include(ProjectHelper)
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# NOTE: for sniper we want the exe suffix to be like 0.7.4, not just 0.7
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diff --git a/vendor/samtools.patch b/vendor/samtools.patch
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index f173017..654f878 100644
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--- a/vendor/samtools.patch
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+++ b/vendor/samtools.patch
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@@ -6,7 +6,7 @@ diff -Nuar a/Makefile b/Makefile
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samtools:lib $(AOBJS)
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- $(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) $(LIBCURSES) -lz -L. -lbam
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-+ $(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) $(LIBCURSES) -L. -lbam -lz
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++ $(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) -lncurses -L. -lbam -lz
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razip:razip.o razf.o
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$(CC) $(CFLAGS) -o $@ razf.o razip.o -lz
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