uboot: (firmwareOdroidC2/C4) don't invoke patch tool, use patches = [] instead

https://github.com/NixOS/nixpkgs/blob/master/pkgs/stdenv/generic/setup.sh#L948 this can do it nicely. Signed-off-by: Anton Arapov <anton@deadbeef.mx>
2021-04-03 12:58:10 +02:00 · 2021-04-03 12:58:10 +02:00 · 56de2bcd43
commit 56de2bcd43
30691 changed files with 3076956 additions and 0 deletions
--- a/pkgs/applications/science/misc/root/5.nix
+++ b/pkgs/applications/science/misc/root/5.nix
@ -0,0 +1,149 @@
+{ lib
+, stdenv
+, fetchurl
+, fetchpatch
+, cmake
+, pcre
+, pkg-config
+, python2
+, libX11
+, libXpm
+, libXft
+, libXext
+, libGLU
+, libGL
+, zlib
+, libxml2
+, lz4
+, xz
+, gsl_1
+, xxHash
+, Cocoa
+, OpenGL
+, noSplash ? false
+}:
+
+stdenv.mkDerivation rec {
+  pname = "root";
+  version = "5.34.38";
+
+  src = fetchurl {
+    url = "https://root.cern.ch/download/root_v${version}.source.tar.gz";
+    sha256 = "1ln448lszw4d6jmbdphkr2plwxxlhmjkla48vmmq750xc1lxlfrc";
+  };
+
+  nativeBuildInputs = [ cmake pkg-config ];
+  buildInputs = [ pcre python2 zlib libxml2 lz4 xz gsl_1 xxHash ]
+    ++ lib.optionals (!stdenv.isDarwin) [ libX11 libXpm libXft libXext libGLU libGL ]
+    ++ lib.optionals (stdenv.isDarwin) [ Cocoa OpenGL ]
+  ;
+
+  patches = [
+    ./sw_vers_root5.patch
+
+    # prevents rootcint from looking in /usr/includes and such
+    ./purify_include_paths_root5.patch
+
+    # disable dictionary generation for stuff that includes libc headers
+    # our glibc requires a modern compiler
+    ./disable_libc_dicts_root5.patch
+
+    (fetchpatch {
+      name = "root5-gcc9-fix.patch";
+      url = "https://github.com/root-project/root/commit/348f30a6a3b5905ef734a7bd318bc0ee8bca6dc9.diff";
+      sha256 = "0dvrsrkpacyn5z87374swpy7aciv9a8s6m61b4iqd7a956r67rn3";
+    })
+    (fetchpatch {
+      name = "root5-gcc10-fix.patch";
+      url = "https://github.com/root-project/root/commit/3c243b18768d3c3501faf3ca4e4acfc071021350.diff";
+      sha256 = "1hjmgnp4zx6im8ps78673x0rrhmfyy1nffhgxjlfl1r2z8cq210z";
+    })
+  ];
+
+  preConfigure = ''
+    # binutils 2.37 fixes
+    fixupList=(
+      cint/demo/gl/make0
+      cint/demo/exception/Makefile
+      cint/demo/makecint/KRcc/Makefile
+      cint/demo/makecint/Stub2/Make2
+      cint/demo/makecint/Array/Makefile
+      cint/demo/makecint/DArray/Makefile
+      cint/demo/makecint/ReadFile/Makefile
+      cint/demo/makecint/stl/Makefile
+      cint/demo/makecint/Stub2/Make1
+      cint/cint/include/makemat
+      cint/cint/lib/WildCard/Makefile
+      cint/cint/include/make.arc
+      cint/cint/lib/qt/Makefile
+      cint/cint/lib/pthread/Makefile
+      graf2d/asimage/src/libAfterImage/Makefile.in
+    )
+    for toFix in "''${fixupList[@]}"; do
+      substituteInPlace "$toFix" --replace "clq" "cq"
+    done
+
+    patchShebangs build/unix/
+    ln -s ${lib.getDev stdenv.cc.libc}/include/AvailabilityMacros.h cint/cint/include/
+
+    # __malloc_hook is deprecated
+    substituteInPlace misc/memstat/src/TMemStatHook.cxx \
+      --replace "defined(R__GNU) && (defined(R__LINUX) || defined(__APPLE__))" \
+                "defined(R__GNU) && (defined(__APPLE__))"
+  ''
+  # Fix CINTSYSDIR for "build" version of rootcint
+  # This is probably a bug that breaks out-of-source builds
+  + ''
+    substituteInPlace cint/cint/src/loadfile.cxx\
+      --replace 'env = "cint";' 'env = "'`pwd`'/cint";'
+  '' + lib.optionalString noSplash ''
+    substituteInPlace rootx/src/rootx.cxx --replace "gNoLogo = false" "gNoLogo = true"
+  '';
+
+  cmakeFlags = [
+    "-Drpath=ON"
+    "-DCMAKE_INSTALL_LIBDIR=lib"
+    "-DCMAKE_INSTALL_INCLUDEDIR=include"
+    "-DCMAKE_CXX_FLAGS=-std=c++11"
+    "-Dalien=OFF"
+    "-Dbonjour=OFF"
+    "-Dcastor=OFF"
+    "-Dchirp=OFF"
+    "-Ddavix=OFF"
+    "-Ddcache=OFF"
+    "-Dfftw3=OFF"
+    "-Dfitsio=OFF"
+    "-Dfortran=OFF"
+    "-Dgfal=OFF"
+    "-Dgsl_shared=ON"
+    "-Dgviz=OFF"
+    "-Dhdfs=OFF"
+    "-Dkrb5=OFF"
+    "-Dldap=OFF"
+    "-Dmathmore=ON"
+    "-Dmonalisa=OFF"
+    "-Dmysql=OFF"
+    "-Dodbc=OFF"
+    "-Dopengl=ON"
+    "-Doracle=OFF"
+    "-Dpgsql=OFF"
+    "-Dpythia6=OFF"
+    "-Dpythia8=OFF"
+    "-Drfio=OFF"
+    "-Dsqlite=OFF"
+    "-Dssl=OFF"
+    "-Dxml=ON"
+    "-Dxrootd=OFF"
+  ]
+  ++ lib.optional stdenv.isDarwin "-DOPENGL_INCLUDE_DIR=${OpenGL}/Library/Frameworks";
+
+  setupHook = ./setup-hook.sh;
+
+  meta = with lib; {
+    homepage = "https://root.cern.ch/";
+    description = "A data analysis framework";
+    platforms = platforms.unix;
+    maintainers = with maintainers; [ veprbl ];
+    license = licenses.lgpl21;
+  };
+}
--- a/pkgs/applications/science/misc/root/default.nix
+++ b/pkgs/applications/science/misc/root/default.nix
@ -0,0 +1,192 @@
+{ stdenv
+, lib
+, fetchurl
+, fetchpatch
+, makeWrapper
+, cmake
+, git
+, ftgl
+, gl2ps
+, glew
+, gsl
+, lapack
+, libX11
+, libXpm
+, libXft
+, libXext
+, libGLU
+, libGL
+, libxml2
+, llvm_9
+, lz4
+, xz
+, openblas
+, pcre
+, nlohmann_json
+, pkg-config
+, python
+, xxHash
+, zlib
+, zstd
+, libAfterImage
+, giflib
+, libjpeg
+, libtiff
+, libpng
+, tbb
+, Cocoa
+, CoreSymbolication
+, OpenGL
+, noSplash ? false
+}:
+
+stdenv.mkDerivation rec {
+  pname = "root";
+  version = "6.24.06";
+
+  src = fetchurl {
+    url = "https://root.cern.ch/download/root_v${version}.source.tar.gz";
+    sha256 = "sha256-kH9p9LrKHk8w7rSXlZjKdZm2qoA8oEboDiW2u6oO9SI=";
+  };
+
+  nativeBuildInputs = [ makeWrapper cmake pkg-config git ];
+  buildInputs = [
+    ftgl
+    gl2ps
+    glew
+    pcre
+    zlib
+    zstd
+    lapack
+    libxml2
+    llvm_9
+    lz4
+    xz
+    gsl
+    openblas
+    xxHash
+    libAfterImage
+    giflib
+    libjpeg
+    libtiff
+    libpng
+    nlohmann_json
+    python.pkgs.numpy
+    tbb
+  ]
+  ++ lib.optionals (!stdenv.isDarwin) [ libX11 libXpm libXft libXext libGLU libGL ]
+  ++ lib.optionals (stdenv.isDarwin) [ Cocoa CoreSymbolication OpenGL ]
+  ;
+
+  patches = [
+    ./sw_vers.patch
+
+    # Fix builtin_llvm=OFF support
+    (fetchpatch {
+      url = "https://github.com/root-project/root/commit/0cddef5d3562a89fe254e0036bb7d5ca8a5d34d2.diff";
+      excludes = [ "interpreter/cling/tools/plugins/clad/CMakeLists.txt" ];
+      sha256 = "sha256-VxWUbxRHB3O6tERFQdbGI7ypDAZD3sjSi+PYfu1OAbM=";
+    })
+  ];
+
+  # Fix build against vanilla LLVM 9
+  postPatch = ''
+    sed \
+      -e '/#include "llvm.*RTDyldObjectLinkingLayer.h"/i#define private protected' \
+      -e '/#include "llvm.*RTDyldObjectLinkingLayer.h"/a#undef private' \
+      -i interpreter/cling/lib/Interpreter/IncrementalJIT.h
+  '';
+
+  preConfigure = ''
+    rm -rf builtins/*
+    substituteInPlace cmake/modules/SearchInstalledSoftware.cmake \
+      --replace 'set(lcgpackages ' '#set(lcgpackages '
+
+    # Don't require textutil on macOS
+    : > cmake/modules/RootCPack.cmake
+
+    # Hardcode path to fix use with cmake
+    sed -i cmake/scripts/ROOTConfig.cmake.in \
+      -e '1iset(nlohmann_json_DIR "${nlohmann_json}/lib/cmake/nlohmann_json/")'
+
+    patchShebangs build/unix/
+  '' + lib.optionalString noSplash ''
+    substituteInPlace rootx/src/rootx.cxx --replace "gNoLogo = false" "gNoLogo = true"
+  '' + lib.optionalString stdenv.isDarwin ''
+    # Eliminate impure reference to /System/Library/PrivateFrameworks
+    substituteInPlace core/CMakeLists.txt \
+      --replace "-F/System/Library/PrivateFrameworks" ""
+  '';
+
+  cmakeFlags = [
+    "-Drpath=ON"
+    "-DCMAKE_INSTALL_BINDIR=bin"
+    "-DCMAKE_INSTALL_LIBDIR=lib"
+    "-DCMAKE_INSTALL_INCLUDEDIR=include"
+    "-Dbuiltin_llvm=OFF"
+    "-Dbuiltin_nlohmannjson=OFF"
+    "-Dbuiltin_openui5=OFF"
+    "-Dalien=OFF"
+    "-Dbonjour=OFF"
+    "-Dcastor=OFF"
+    "-Dchirp=OFF"
+    "-Dclad=OFF"
+    "-Ddavix=OFF"
+    "-Ddcache=OFF"
+    "-Dfail-on-missing=ON"
+    "-Dfftw3=OFF"
+    "-Dfitsio=OFF"
+    "-Dfortran=OFF"
+    "-Dimt=ON"
+    "-Dgfal=OFF"
+    "-Dgviz=OFF"
+    "-Dhdfs=OFF"
+    "-Dhttp=ON"
+    "-Dkrb5=OFF"
+    "-Dldap=OFF"
+    "-Dmonalisa=OFF"
+    "-Dmysql=OFF"
+    "-Dodbc=OFF"
+    "-Dopengl=ON"
+    "-Doracle=OFF"
+    "-Dpgsql=OFF"
+    "-Dpythia6=OFF"
+    "-Dpythia8=OFF"
+    "-Drfio=OFF"
+    "-Droot7=OFF"
+    "-Dsqlite=OFF"
+    "-Dssl=OFF"
+    "-Dtmva=ON"
+    "-Dvdt=OFF"
+    "-Dwebgui=OFF"
+    "-Dxml=ON"
+    "-Dxrootd=OFF"
+  ]
+  ++ lib.optional (stdenv.cc.libc != null) "-DC_INCLUDE_DIRS=${lib.getDev stdenv.cc.libc}/include"
+  ++ lib.optionals stdenv.isDarwin [
+    "-DOPENGL_INCLUDE_DIR=${OpenGL}/Library/Frameworks"
+    "-DCMAKE_DISABLE_FIND_PACKAGE_Python2=TRUE"
+
+    # fatal error: module map file '/nix/store/<hash>-Libsystem-osx-10.12.6/include/module.modulemap' not found
+    # fatal error: could not build module '_Builtin_intrinsics'
+    "-Druntime_cxxmodules=OFF"
+  ];
+
+  postInstall = ''
+    for prog in rootbrowse rootcp rooteventselector rootls rootmkdir rootmv rootprint rootrm rootslimtree; do
+      wrapProgram "$out/bin/$prog" \
+        --set PYTHONPATH "$out/lib" \
+        --set ${lib.optionalString stdenv.isDarwin "DY"}LD_LIBRARY_PATH "$out/lib"
+    done
+  '';
+
+  setupHook = ./setup-hook.sh;
+
+  meta = with lib; {
+    homepage = "https://root.cern.ch/";
+    description = "A data analysis framework";
+    platforms = platforms.unix;
+    maintainers = [ maintainers.veprbl ];
+    license = licenses.lgpl21;
+  };
+}
--- a/pkgs/applications/science/misc/root/disable_libc_dicts_root5.patch
+++ b/pkgs/applications/science/misc/root/disable_libc_dicts_root5.patch
@ -0,0 +1,27 @@
+diff --git a/cint/ROOT/CMakeLists.txt b/cint/ROOT/CMakeLists.txt
+--- a/cint/ROOT/CMakeLists.txt
+++ b/cint/ROOT/CMakeLists.txt
+@@ -47,21 +47,13 @@ set(CINTSTLDLLHEADERS
+     ${CMAKE_SOURCE_DIR}/cint/cint/lib/stdstrct/stdcxxfunc.h
+   )
+ set(CINTINCDLLNAMES 
+-    stdfunc 
+#    stdfunc 
+ #    stdcxxfunc
+    )
+ set(CINTINCDLLHEADERS
+-    ${CMAKE_SOURCE_DIR}/cint/cint/lib/stdstrct/stdfunc.h 
+#    ${CMAKE_SOURCE_DIR}/cint/cint/lib/stdstrct/stdfunc.h 
+ #    ${CMAKE_SOURCE_DIR}/cint/cint/lib/stdstrct/stdcxxfunc.h
+    )
+-if(NOT WIN32)
+-  set(CINTSTLDLLNAMES ${CINTSTLDLLNAMES}  valarray)
+-  set(CINTSTLDLLHEADERS ${CINTSTLDLLHEADERS} ${CINTDLLDIR}/vary.h)
+-  set(CINTINCDLLNAMES ${CINTINCDLLNAMES} posix ipc)
+-  set(CINTINCDLLHEADERS ${CINTINCDLLHEADERS} 
+-    ${CMAKE_SOURCE_DIR}/cint/cint/lib/posix/exten.h 
+-    ${CMAKE_SOURCE_DIR}/cint/cint/lib/ipc/ipcif.h)
+-endif()
+ 
+ set(CINTBUILDLOADER
+     vector 
--- a/pkgs/applications/science/misc/root/purify_include_paths_root5.patch
+++ b/pkgs/applications/science/misc/root/purify_include_paths_root5.patch
@ -0,0 +1,204 @@
+diff --git a/cint/cint/src/loadfile.cxx b/cint/cint/src/loadfile.cxx
+--- a/cint/cint/src/loadfile.cxx
+++ b/cint/cint/src/loadfile.cxx
+@@ -1365,92 +1365,6 @@ int G__statfilename(const char *filenamein, struct stat *statBuf,
+          }
+       }         
+ #endif /* G__EDU_VERSION */
+-      
+-#ifdef G__VISUAL
+-      /**********************************************
+-       * try /msdev/include
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         workname.Format("/msdev/include/%s%s",filename(),addpost[i2]);
+-         res = stat( workname, statBuf );         
+-         if (res==0) {
+-            if (fullPath) fullPath->Swap(workname);
+-            return res;
+-         }
+-      }
+-#endif /* G__VISUAL */
+-         
+-#ifdef G__SYMANTEC
+-      /**********************************************
+-       * try /sc/include
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         workname.Format("/sc/include/%s%s",filename(),addpost[i2]);
+-         res = stat( workname, statBuf );         
+-         if (res==0) {
+-            if (fullPath) fullPath->Swap(workname);
+-            return res;
+-         }
+-      }
+-#endif // G__SYMANTEC
+-         
+-#ifndef G__WIN32
+-      /**********************************************
+-       * try /usr/include/filename
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         workname.Format("/usr/include/%s%s",filename(),addpost[i2]);
+-         res = stat( workname, statBuf );         
+-         if (res==0) {
+-            if (fullPath) fullPath->Swap(workname);
+-            return res;
+-         }
+-      }
+-#endif
+-      
+-#ifdef __GNUC__
+-      /**********************************************
+-       * try /usr/include/g++/filename
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         workname.Format("/usr/include/g++/%s%s",filename(),addpost[i2]);
+-         res = stat( workname, statBuf );         
+-         if (res==0) {
+-            if (fullPath) fullPath->Swap(workname);
+-            return res;
+-         }
+-      }
+-#endif /* __GNUC__ */
+-      
+-#ifndef G__WIN32
+-      /* #ifdef __hpux */
+-      /**********************************************
+-       * try /usr/include/CC/filename
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         workname.Format("/usr/include/CC/%s%s",filename(),addpost[i2]);
+-         res = stat( workname, statBuf );         
+-         if (res==0) {
+-            if (fullPath) fullPath->Swap(workname);
+-            return res;
+-         }
+-      }         
+-#endif
+-         
+-#ifndef G__WIN32
+-      /**********************************************
+-       * try /usr/include/codelibs/filename
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         workname.Format("/usr/include/codelibs/%s%s"
+-                         ,filename(),addpost[i2]);
+-         res = stat( workname, statBuf );         
+-         if (res==0) {
+-            if (fullPath) fullPath->Swap(workname);
+-            return res;
+-         }
+-      }
+-#endif
+    }
+    return -1;
+ }
+@@ -1960,107 +1874,6 @@ int G__loadfile(const char *filenamein)
+       }
+       if(G__ifile.fp) break;
+ #endif /* G__EDU_VERSION */
+-
+-#ifdef G__VISUAL
+-      /**********************************************
+-       * try /msdev/include
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         G__snprintf(G__ifile.name,G__MAXFILENAME,"/msdev/include/%s%s",filename(),addpost[i2]);
+-#ifndef G__WIN32
+-        G__ifile.fp = fopen(G__ifile.name,"r");
+-#else
+-        G__ifile.fp = fopen(G__ifile.name,"rb");
+-#endif
+-        G__globalcomp=G__store_globalcomp;
+-      }
+-      if(G__ifile.fp) break;
+-#endif /* G__VISUAL */
+-
+-#ifdef G__SYMANTEC
+-      /**********************************************
+-       * try /sc/include
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         G__snprintf(G__ifile.name,G__MAXFILENAME,"/sc/include/%s%s",filename(),addpost[i2]);
+-#ifndef G__WIN32
+-        G__ifile.fp = fopen(G__ifile.name,"r");
+-#else
+-        G__ifile.fp = fopen(G__ifile.name,"rb");
+-#endif
+-        G__globalcomp=G__store_globalcomp;
+-      }
+-      if(G__ifile.fp) break;
+-#endif /* G__SYMANTEC */
+-
+-#ifndef G__WIN32
+-      /**********************************************
+-       * try /usr/include/filename
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         G__snprintf(G__ifile.name,G__MAXFILENAME,"/usr/include/%s%s",filename(),addpost[i2]);
+-#ifndef G__WIN32
+-        G__ifile.fp = fopen(G__ifile.name,"r");
+-#else
+-        G__ifile.fp = fopen(G__ifile.name,"rb");
+-#endif
+-        G__globalcomp=G__store_globalcomp;
+-      }
+-      if(G__ifile.fp) break;
+-#endif
+-
+-#ifdef __GNUC__
+-      /**********************************************
+-       * try /usr/include/g++/filename
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         G__snprintf(G__ifile.name,G__MAXFILENAME,"/usr/include/g++/%s%s",filename(),addpost[i2]);
+-#ifndef G__WIN32
+-        G__ifile.fp = fopen(G__ifile.name,"r");
+-#else
+-        G__ifile.fp = fopen(G__ifile.name,"rb");
+-#endif
+-        G__globalcomp=G__store_globalcomp;
+-      }
+-      if(G__ifile.fp) break;
+-#endif /* __GNUC__ */
+-
+-#ifndef G__WIN32
+-/* #ifdef __hpux */
+-      /**********************************************
+-       * try /usr/include/CC/filename
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-         G__snprintf(G__ifile.name,G__MAXFILENAME,"/usr/include/CC/%s%s",filename(),addpost[i2]);
+-#ifndef G__WIN32
+-        G__ifile.fp = fopen(G__ifile.name,"r");
+-#else
+-        G__ifile.fp = fopen(G__ifile.name,"rb");
+-#endif
+-        G__globalcomp=G__store_globalcomp;
+-      }
+-      if(G__ifile.fp) break;
+-/* #endif __hpux */
+-#endif
+-
+-#ifndef G__WIN32
+-/* #ifdef __hpux */
+-      /**********************************************
+-       * try /usr/include/codelibs/filename
+-       **********************************************/
+-      if('\0'!=G__cintsysdir[0]) {
+-        G__snprintf(G__ifile.name,G__MAXFILENAME,"/usr/include/codelibs/%s%s"
+-                    ,filename(),addpost[i2]);
+-#ifndef G__WIN32
+-        G__ifile.fp = fopen(G__ifile.name,"r");
+-#else
+-        G__ifile.fp = fopen(G__ifile.name,"rb");
+-#endif
+-        G__globalcomp=G__store_globalcomp;
+-      }
+-      if(G__ifile.fp) break;
+-/* #endif __hpux */
+-#endif
+     }
+   }
+ 
--- a/pkgs/applications/science/misc/root/setup-hook.sh
+++ b/pkgs/applications/science/misc/root/setup-hook.sh
@ -0,0 +1,13 @@
+thisroot () {
+    # Workaround thisroot.sh dependency on man
+    if [ -z "${MANPATH-}" ]; then
+        MANPATH=:
+    fi
+    local oldOpts="-u"
+    shopt -qo nounset || oldOpts="+u"
+    set +u
+    source @out@/bin/thisroot.sh
+    set "$oldOpts"
+}
+
+postHooks+=(thisroot)
--- a/pkgs/applications/science/misc/root/sw_vers.patch
+++ b/pkgs/applications/science/misc/root/sw_vers.patch
@ -0,0 +1,87 @@
+diff a/cmake/modules/SetUpMacOS.cmake b/cmake/modules/SetUpMacOS.cmake
+--- a/cmake/modules/SetUpMacOS.cmake
+++ b/cmake/modules/SetUpMacOS.cmake
+@@ -28,17 +28,10 @@ if(CMAKE_VERSION VERSION_LESS 3.14.4)
+ endif()
+ 
+ if (CMAKE_SYSTEM_NAME MATCHES Darwin)
+-  EXECUTE_PROCESS(COMMAND sw_vers "-productVersion"
+-                  COMMAND cut -d . -f 1-2
+-                  OUTPUT_VARIABLE MACOSX_VERSION OUTPUT_STRIP_TRAILING_WHITESPACE)
+-
+   MESSAGE(STATUS "Found a macOS system ${MACOSX_VERSION}")
+ 
+-  if(MACOSX_VERSION VERSION_GREATER 10.7 AND ${CMAKE_CXX_COMPILER_ID} MATCHES Clang)
+     set(libcxx ON CACHE BOOL "Build using libc++" FORCE)
+-  endif()
+ 
+-  if(MACOSX_VERSION VERSION_GREATER 10.4)
+     #TODO: check haveconfig and rpath -> set rpath true
+     #TODO: check Thread, define link command
+     #TODO: more stuff check configure script
+@@ -57,22 +50,7 @@ if (CMAKE_SYSTEM_NAME MATCHES Darwin)
+        SET(CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS "${CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS} -m64")
+        SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -m64")
+        SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -m64")
+-    else()
+-       SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -m32")
+-       SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -m32")
+-       SET(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -m32")
+     endif()
+-  endif()
+-
+-  if(MACOSX_VERSION VERSION_GREATER 10.6)
+-    set(MACOSX_SSL_DEPRECATED ON)
+-  endif()
+-  if(MACOSX_VERSION VERSION_GREATER 10.7)
+-    set(MACOSX_ODBC_DEPRECATED ON)
+-  endif()
+-  if(MACOSX_VERSION VERSION_GREATER 10.8)
+-    set(MACOSX_GLU_DEPRECATED ON)
+-  endif()
+ 
+   if (CMAKE_COMPILER_IS_GNUCXX)
+      SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -W -Wshadow -Wall -Woverloaded-virtual -fsigned-char -fno-common")
+@@ -130,7 +108,6 @@ if (CMAKE_SYSTEM_NAME MATCHES Darwin)
+   endif()
+ 
+   #---Set Linker flags----------------------------------------------------------------------
+-  set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -mmacosx-version-min=${MACOSX_VERSION}")
+ else (CMAKE_SYSTEM_NAME MATCHES Darwin)
+   MESSAGE(FATAL_ERROR "There is no setup for this this Apple system up to now. Don't know waht to do. Stop cmake at this point.")
+ endif (CMAKE_SYSTEM_NAME MATCHES Darwin)
+diff a/config/root-config.in b/config/root-config.in
+--- a/config/root-config.in
+++ b/config/root-config.in
+@@ -312,12 +312,6 @@ macosxicc)
+    ;;
+ macosx64|macosxarm64)
+    # MacOS X with gcc (GNU cc v4.x) in 64 bit mode
+-   macosx_major=`sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 1 | sed -e 's/^[[:space:]]*//'`
+-   macosx_minor=`sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2`
+-   # cannot find the one linked to libGraf if relocated after built
+-   if [ $macosx_major -eq 10 -a $macosx_minor -le 4 ]; then
+-      rootlibs="$rootlibs -lfreetype"
+-   fi
+    auxcflags="${cxxversionflag} -m64"
+    auxldflags="-m64"
+    auxlibs="-lm -ldl"
+@@ -378,18 +372,11 @@ freebsd* | openbsd* | linux*)
+    done
+    ;;
+ macosx*)
+-   if [ \( $macosx_major -eq 10 -a $macosx_minor -ge 5 \) -o $macosx_major -gt 10  ]; then
+       auxcflags="-pthread $auxcflags"
+       auxlibs="-lpthread $auxlibs"
+-   else
+-      auxcflags="-D_REENTRANT $auxcflags"
+-      auxlibs="-lpthread $auxlibs"
+-   fi
+    for f in $features ; do
+       if test "x$f" = "xrpath" ; then
+-         if [ \( $macosx_major -eq 10 -a $macosx_minor -ge 5 \) -o $macosx_major -gt 10  ]; then
+             auxlibs="-Wl,-rpath,$libdir $auxlibs"
+-         fi
+       fi
+       if test "x$f" = "xlibcxx" ; then
+          auxcflags="-stdlib=libc++ $auxcflags"
--- a/pkgs/applications/science/misc/root/sw_vers_root5.patch
+++ b/pkgs/applications/science/misc/root/sw_vers_root5.patch
@ -0,0 +1,104 @@
+diff --git a/build/unix/compiledata.sh b/build/unix/compiledata.sh
+--- a/build/unix/compiledata.sh
+++ b/build/unix/compiledata.sh
+@@ -49,7 +49,7 @@ fi
+ 
+ if [ "$ARCH" = "macosx" ] || [ "$ARCH" = "macosx64" ] || \
+    [ "$ARCH" = "macosxicc" ]; then
+-   macosx_minor=`sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2`
+   macosx_minor=7
+    SOEXT="so"
+    if [ $macosx_minor -ge 5 ]; then
+       if [ "x`echo $SOFLAGS | grep -- '-install_name'`" != "x" ]; then
+diff --git a/cmake/modules/SetUpMacOS.cmake b/cmake/modules/SetUpMacOS.cmake
+--- a/cmake/modules/SetUpMacOS.cmake
+++ b/cmake/modules/SetUpMacOS.cmake
+@@ -12,25 +12,11 @@ set(CMAKE_PREFIX_PATH ${CMAKE_PREFIX_PATH} /usr/X11R6)
+ #---------------------------------------------------------------------------------------------------------
+ 
+ if (CMAKE_SYSTEM_NAME MATCHES Darwin)
+-  EXECUTE_PROCESS(COMMAND sw_vers "-productVersion"
+-                  COMMAND cut -d . -f 1-2
+-                  OUTPUT_VARIABLE MACOSX_VERSION OUTPUT_STRIP_TRAILING_WHITESPACE)
+-  MESSAGE(STATUS "Found a Mac OS X System ${MACOSX_VERSION}")
+-  EXECUTE_PROCESS(COMMAND sw_vers "-productVersion"
+-                  COMMAND cut -d . -f 2
+-                  OUTPUT_VARIABLE MACOSX_MINOR OUTPUT_STRIP_TRAILING_WHITESPACE)
+-
+-  if(MACOSX_VERSION VERSION_GREATER 10.7 AND ${CMAKE_CXX_COMPILER_ID} STREQUAL Clang)
+     set(libcxx ON CACHE BOOL "Build using libc++" FORCE)
+-  endif()
+ 
+-  if(${MACOSX_MINOR} GREATER 4)
+     #TODO: check haveconfig and rpath -> set rpath true
+     #TODO: check Thread, define link command
+     #TODO: more stuff check configure script
+-    execute_process(COMMAND /usr/sbin/sysctl machdep.cpu.extfeatures OUTPUT_VARIABLE SYSCTL_OUTPUT)
+-    if(${SYSCTL_OUTPUT} MATCHES 64)
+-       MESSAGE(STATUS "Found a 64bit system")
+        set(ROOT_ARCHITECTURE macosx64)
+        SET(CMAKE_SHARED_LINKER_FLAGS "${CMAKE_SHARED_LINKER_FLAGS}")
+        SET(CMAKE_SHARED_LIBRARY_CREATE_C_FLAGS "${CMAKE_SHARED_LIBRARY_CREATE_C_FLAGS} -m64")
+@@ -38,28 +24,6 @@ if (CMAKE_SYSTEM_NAME MATCHES Darwin)
+        SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -m64")
+        SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -m64")
+        SET(CMAKE_FORTRAN_FLAGS "${CMAKE_FORTRAN_FLAGS} -m64")
+-    else(${SYSCTL_OUTPUT} MATCHES 64)
+-       MESSAGE(STATUS "Found a 32bit system")
+-       SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -m32")
+-       SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -m32")
+-       SET(CMAKE_FORTRAN_FLAGS "${CMAKE_FORTRAN_FLAGS} -m32")
+-    endif(${SYSCTL_OUTPUT} MATCHES 64)
+-  endif()
+-
+-  if(MACOSX_VERSION VERSION_GREATER 10.6)
+-    set(MACOSX_SSL_DEPRECATED ON)
+-  endif()
+-  if(MACOSX_VERSION VERSION_GREATER 10.7)
+-    set(MACOSX_ODBC_DEPRECATED ON)
+-  endif()
+-  if(MACOSX_VERSION VERSION_GREATER 10.8)
+-    set(MACOSX_GLU_DEPRECATED ON)
+-    set(MACOSX_KRB5_DEPRECATED ON)
+-    set(MACOSX_TMPNAM_DEPRECATED ON)
+-  endif()
+-  if(MACOSX_VERSION VERSION_GREATER 10.9)
+-    set(MACOSX_LDAP_DEPRECATED ON)
+-  endif()
+ 
+   if (CMAKE_COMPILER_IS_GNUCXX)
+      message(STATUS "Found GNU compiler collection")
+@@ -132,7 +96,7 @@ if (CMAKE_SYSTEM_NAME MATCHES Darwin)
+   endif()
+ 
+   #---Set Linker flags----------------------------------------------------------------------
+-  set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS}  -mmacosx-version-min=${MACOSX_VERSION} -Wl,-rpath,@loader_path/../lib")
+  set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -Wl,-rpath,@loader_path/../lib")
+ 
+ 
+ else (CMAKE_SYSTEM_NAME MATCHES Darwin)
+diff --git a/config/root-config.in b/config/root-config.in
+--- a/config/root-config.in
+++ b/config/root-config.in
+@@ -391,7 +391,7 @@ macosxicc)
+    ;;
+ macosx64)
+    # MacOS X with gcc (GNU cc v4.x) in 64 bit mode
+-   macosx_minor=`sw_vers | sed -n 's/ProductVersion://p' | cut -d . -f 2`
+   macosx_minor=7
+    # cannot find the one linked to libGraf if relocated after built
+    if [ $macosx_minor -le 4 ]; then
+       rootlibs="$rootlibs -lfreetype"
+diff --git a/cint/ROOT/CMakeLists.txt b/cint/ROOT/CMakeLists.txt
+--- a/cint/ROOT/CMakeLists.txt
+++ b/cint/ROOT/CMakeLists.txt
+@@ -232,9 +232,7 @@ foreach(_name ${CINTINCDLLNAMES})
+                        DEPENDS ${HEADER_OUTPUT_PATH}/systypes.h
+                       )
+
+-    if(MACOSX_MINOR GREATER 4)
+       set(_ExtraFlag "-D__DARWIN_UNIX03")
+-    endif()
+
+     add_custom_command(OUTPUT ${OutFileName}
+                        COMMAND cint_tmp -K -w1 -z${_name} -n${OutFileName} -D__MAKECINT__ -DG__MAKECINT ${_ExtraFlag} -c-2 -Z0 ${InFileName} ${AdditionalHeaderFiles} ${CMAKE_BINARY_DIR}/cint/cint/include/sys/types.h ${CMAKE_SOURCE_DIR}/cint/cint/lib/posix/posix.h